8541 PRK00142
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8541 chr_10 PRK00142 851330 853530 + PRK00142

Synonyms

NCBI ID Ensembl Genomes exon ID
7446905 Thaps8541.2, Thaps8541.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0188
 0.22

Most Highly Correlated Transcripts

39540

Alpha_ANH_like_II
0.9296

263350

(RPC25) RPB7
0.9293

34596

WD40
0.9277

3858

PTZ00141
0.9268

21959

hypothetical protein
0.9255

32395

RNA_pol
0.9252

37705

DUF4110
0.9223

33670

RNRR2
0.9217

34176

AdoMet_MTases superfamily
0.9189

263641

InfB
0.9179

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RHOD superfamily Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese... - 124.999 1.22E-33 319 - 437 superfamily 260205
PRK00142 putative rhodanese-related sulfurtransferase; Provisional - 191.599 5.78E-55 186 - 540 multi-dom 234663

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48602 PHATRDRAFT_48602 260018 217626 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0003917 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003917

DNA topoisomerase type I activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
GO Category: 
MF

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