18109 COG2119
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18109 chr_6 COG2119 843530 844732 - COG2119

Synonyms

NCBI ID Ensembl Genomes exon ID
7448627 Thaps18109.2, Thaps18109.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

21813

hypothetical protein
0.8895

plastid_psb28

0.8625

40034

thrS
0.8266

ThpsCp096

(rpl4) ribosomal protein L4
0.8212

ThpsCp097

(rpl23) ribosomal protein L23
0.8207

21858

PRK11819
0.8177

21235

RpsA
0.8089

ThpsCp110

(rpl6) ribosomal protein L6
0.8057

42000

PRK05912
0.8043

ThpsCp108

(rpl5) ribosomal protein L5
0.8021

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UPF0016 superfamily Uncharacterized protein family UPF0016; This family contains integral membrane proteins of unknown... - 74.4447 6.17E-17 277 - 352 superfamily 250414
UPF0016 superfamily Uncharacterized protein family UPF0016; This family contains integral membrane proteins of unknown... - 74.4447 6.17E-17 277 - 352 superfamily 250414
COG2119 Predicted membrane protein [Function unknown] - 110.88 6.42E-29 158 - 360 multi-dom 225030

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12265 PHATRDRAFT_12265 227895 325065 205689 Cre16.g660000.t1.2 AT4G13590.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005554 GO:0016020 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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