21858 PRK11819
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21858 chr_3 PRK11819 1486177 1488485 - PRK11819

Synonyms

NCBI ID Ensembl Genomes exon ID
7449500 Thaps21858.3, Thaps21858.1, Thaps21858.4, Thaps21858.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

6610

hypothetical protein
0.9142

23462

hypothetical protein
0.9133

40028

PLN02286
0.9062

40034

thrS
0.8986

33161

prfA
0.8977

26726

(ITS2) PLN02843
0.8937

21235

RpsA
0.8896

ThpsCp134

(rpl34) ribosomal protein L34
0.8843

4138

hypothetical protein
0.8797

511

(GBP1) PRK09601
0.879

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 164.929 1.04E-47 103 - 348 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 164.929 1.04E-47 103 - 348 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 164.929 1.04E-47 103 - 348 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 164.929 1.04E-47 103 - 348 superfamily 266551
PRK11819 putative ABC transporter ATP-binding protein; Reviewed - 940.313 0 98 - 665 multi-dom 236992

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41857 PHATRDRAFT_41857 228190 247149 453665 Cre07.g335400.t1.1 Not available 347456

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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