19126 (Tp_CCCH12) YTH1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19126	chr_6	(Tp_CCCH12) YTH1	1787723	1789150	-	YTH1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446332	Thaps19126.2, Thaps19126.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0350

Most Highly Correlated Transcripts

36213 PKc_like superfamily 0.9269	264679 Syja_N 0.9242	264072 (HSF43) HSF_DNA-bind superfamily 0.924	17935 DnaQ_like_exo superfamily 0.9187	38180 RED_N superfamily 0.9161	596 Adaptin_N 0.9157
3635 hypothetical protein 0.9118	22666 hypothetical protein 0.9109	21274 hypothetical protein 0.9107	32704 PKc_like superfamily 0.9076

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
YTH1		Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family...	-	61.8108	5.33E-11	6 - 139	multi-dom	227416

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50624	PHATRDRAFT_50624	165242	320463	462691	Cre24.g755647.t1.1	AT1G30460.2	Not available

KEGG

KEGG description	KEGG Pathway
mRNA surveillance pathway	map03015

GO Terms

GO:0003676 -

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