20232 AAA_12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20232 chr_5 AAA_12 2122261 2124509 + AAA_12

Synonyms

NCBI ID Ensembl Genomes exon ID
7444912 Thaps20232.2, Thaps20232.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0265
 0.39

Most Highly Correlated Transcripts

262091

eukaryotic translation initiation factor 3, subunit 10
0.8942

38073

NAP
0.8929

bd1667

(bd1667) Mpp10
0.8846

268486

Glyco_transf_22 superfamily
0.8822

42282

HA2
0.8791

23966

hypothetical protein
0.8767

34027

SrmB
0.8754

7788

(Tp_CCHH23) regulator [Rayko]
0.8729

25183

hypothetical protein
0.8701

24820

hypothetical protein
0.8695

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA_12 superfamily AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA... - 229.742 2.80E-70 371 - 564 superfamily 257490
AAA_12 superfamily AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA... - 229.742 2.80E-70 371 - 564 superfamily 257490
AAA_11 AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA... - 189.76 5.62E-56 171 - 364 multi-dom 257489

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16357 PHATRDRAFT_16357 Not available Not available 212499 Cre01.g040379.t1.2 AT5G47010.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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