38073 NAP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38073 chr_18 NAP 650788 652255 + NAP

Synonyms

NCBI ID Ensembl Genomes exon ID
7450882 Thaps38073.3, Thaps38073.2, Thaps38073.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0110
 0.24

Most Highly Correlated Transcripts

262091

eukaryotic translation initiation factor 3, subunit 10
0.9155

262722

DEXDc superfamily
0.9136

14890

Cupin_8 superfamily
0.9031

22441

hypothetical protein
0.9023

bd96

(bd96) eIF-3_zeta
0.9008

25434

PRK00142
0.8992

268130

hypothetical protein
0.8965

bd1709

(bd1709) NA
0.8953

20232

AAA_12
0.8929

22672

hypothetical protein
0.8918

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAP Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus,... cl08298 222.618 6.01E-70 93 - 342 specific 250252
NAP superfamily Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus,... - 222.618 6.01E-70 93 - 342 superfamily 263575

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9388 PHATRDRAFT_17779 PHATRDRAFT_17779 160544 294871 459881 Cre09.g416350.t1.2 AT4G26110.1 285039

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0006334 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

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