20268 NOT2_3_5 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20268	chr_18	NOT2_3_5 superfamily	342159	342509	-	NOT2_3_5 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444263	Thaps20268.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0427

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.8978	35907 Prp18 0.8885	1706 hypothetical protein 0.8869	32827 MPP_PP2A_PP4_PP6 0.8854	24921 HA 0.8837	2622 hypothetical protein 0.8809
19158 GRX_PICOT_like 0.8783	18662 ADK 0.8775	3348 hypothetical protein 0.8767	21464 BTB 0.8757

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NOT2_3_5 superfamily		NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively...	-	97.7941	7.41E-27	6 - 88	superfamily	261268

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43176	PHATRDRAFT_43176	163284	235472	465136	Cre06.g309050.t1.2	AT1G07705.2	353225

KEGG

KEGG description	KEGG Pathway
RNA degradation	map03018

GO Terms

Not available -

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