20421 RRM_CSTF2_RNA15_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20421	chr_2	RRM_CSTF2_RNA15_like	2308048	2308974	+	RRM_CSTF2_RNA15_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452912	Thaps20421.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0320

Most Highly Correlated Transcripts

10873 NA 0.8665	33699 TRX_family 0.8453	4358 hypothetical protein 0.8426	22359 hypothetical protein 0.8378	32217 MA3 0.8374	11314 hypothetical protein 0.8347
34541 MgtA 0.828	38180 RED_N superfamily 0.8272	263979 PKc_like superfamily 0.8266	8067 Na_Ca_ex 0.8259

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_CSTF2_RNA15_like		RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3&...	cl17169	136.215	5.96E-40	44 - 118	specific	240844
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	136.215	5.96E-40	44 - 118	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	101.177	6.23E-25	37 - 149	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_8451	PHATRDRAFT_8451	273046	67406	Not available	Cre01.g024200.t1.1	AT1G71800.1	251824

KEGG

KEGG description	KEGG Pathway
mRNA surveillance pathway	map03015

GO Terms

GO:0003676 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

Add comment

Log in to post comments