32217 MA3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32217 chr_2 MA3 2252274 2255375 + MA3

Synonyms

NCBI ID Ensembl Genomes exon ID
7450443 Thaps32217.1, Thaps32217.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0414

Most Highly Correlated Transcripts

37638

HrpA
0.9418

35129

(Tp_Myb2R9) PLN03142
0.9332

11371

hypothetical protein
0.9316

262797

Sec7
0.9315

263963

Adaptin_N
0.9293

33699

TRX_family
0.9276

262617

(Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein
0.9268

21655

hypothetical protein
0.924

13920

PAP_central
0.9219

264679

Syja_N
0.9212

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins; Highly alpha-helical. May contain repeats and/or... cl02653 83.4481 1.22E-18 555 - 661 specific 214714
MA3 superfamily MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain... - 83.4481 1.22E-18 555 - 661 superfamily 243129
MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G); Also occurs in NMD2p and CBP80. The... cl02652 81.2527 3.27E-17 255 - 437 specific 214713
MIF4G superfamily MIF4G domain; MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also... - 81.2527 3.27E-17 255 - 437 superfamily 261392

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11785 PHATRDRAFT_11785 157514 188634 415391 Cre06.g259800.t1.2 AT1G80930.1 320313

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

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