21288 dsDNA_bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21288 chr_2 dsDNA_bind 1052346 1053230 - dsDNA_bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7450354 Thaps21288.2, Thaps21288.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0192

Most Highly Correlated Transcripts

31993

DUF3449
0.9342

29469

hypothetical protein
0.9146

20763

CAF1
0.9065

23414

hypothetical protein
0.9028

21749

hypothetical protein
0.9028

268293

Lactamase_B superfamily
0.9013

11848

hypothetical protein
0.8996

1934

hypothetical protein
0.8977

36879

BolA
0.8975

37962

LSm3
0.8967

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
dsDNA_bind Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 bases... cl00928 72.9635 2.05E-17 20 - 106 specific 251015
dsDNA_bind superfamily Double-stranded DNA-binding domain; This domain is believed to bind double-stranded DNA of 20 bases... - 72.9635 2.05E-17 20 - 106 superfamily 260700

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33400 PHATR_33400 250520 62546 Not available Cre12.g557800.t1.2 Not available 333201

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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