21524 Cupin_8 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21524	chr_2	Cupin_8 superfamily	2237031	2238516	-	Cupin_8 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452899	Thaps21524.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0219

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0195	0.28	0.52 1.7

Most Highly Correlated Transcripts

23210 hypothetical protein 0.9037	21973 G-patch 0.8995	24907 Sas10 0.899	20825 hypothetical protein 0.8978	41419 (RT4) RpsD 0.8963	6842 DUF914 0.8954
20583 hypothetical protein 0.8951	3919 Nop25 0.8946	22498 DEXDc superfamily 0.8942	32325 ABC_ATPase superfamily 0.8917

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cupin_8 superfamily		Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.	-	87.4145	2.38E-19	136 - 357	superfamily	267658

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45348	PHATRDRAFT_45348	236383	289831	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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