32325 ABC_ATPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32325 chr_2 ABC_ATPase superfamily 445361 447903 + ABC_ATPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442247 Thaps32325.3, Thaps32325.2, Thaps32325.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0195
 0.28

Most Highly Correlated Transcripts

bd1709

(bd1709) NA
0.9596

bd96

(bd96) eIF-3_zeta
0.9417

32395

RNA_pol
0.9366

2921

RRM_SF
0.936

262018

hypothetical protein
0.9299

261270

0.9286

bd1667

(bd1667) Mpp10
0.9278

36434

DUF1253
0.9277

21050

Ras_like_GTPase superfamily
0.9234

21222

SrmB
0.9209

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 208.162 1.56E-61 527 - 782 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 73.8664 1.04E-14 242 - 415 superfamily 250039
GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] - 155.744 8.87E-43 525 - 771 multi-dom 224051

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22332 PHATRDRAFT_22332 188910 253381 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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