21600 Armet superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21600	chr_3	Armet superfamily	126176	127219	+	Armet superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452798	Thaps21600.2, Thaps21600.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0052

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0066	0.42	13 340

Most Highly Correlated Transcripts

4604 hypothetical protein 0.9208	262977 NA 0.9127	34340 hypothetical protein 0.906	17859 DER1 superfamily 0.9049	9049 hypothetical protein 0.8994	22547 hypothetical protein 0.8992
31751 PKCI_related 0.8974	21865 hypothetical protein 0.8951	36456 eIF-5_eIF-2B superfamily 0.8858	41655 Chloroa_b-bind 0.8857

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Armet superfamily		Degradation arginine-rich protein for mis-folding; This is a family of small proteins of...	-	94.832	8.33E-25	25 - 160	superfamily	150823

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32237	PHATRDRAFT_32237	275419	282471	433800	Not available	Not available	496425

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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