21830 WLM superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21830 chr_3 WLM superfamily 1343881 1345212 + WLM superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451269 Thaps21830.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0115

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

bd409

(bd409) Snf7 superfamily
0.8894

bd877

(bd877) NA
0.8843

bd1813

(bd1813) NA
0.8782

bd1835

(bd1835) NA
0.8758

17865

HemeO
0.8696

bd692

(bd692) NA
0.8605

3604

hypothetical protein
0.8543

25415

LRR_5
0.854

bd1840

(bd1840) NA
0.8483

bd933

(bd933) NA
0.8481

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WLM superfamily WLM domain; This is a predicted metallopeptidase domain called WLM (Wss1p-like metalloproteases).... - 89.3 5.32E-21 167 - 298 superfamily 254730

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48319 PHATRDRAFT_48319 252054 4932 373278 Cre16.g684000.t1.1 AT5G35690.1 249618

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008237 GO:0008270 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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