21929 COG0116
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21929 chr_3 COG0116 1829642 1831637 + COG0116

Synonyms

NCBI ID Ensembl Genomes exon ID
7445340 Thaps21929.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.972

bd1709

(bd1709) NA
0.9466

29705

18S_RNA_Rcl1p
0.9319

22036

ElaC
0.9303

21305

hypothetical protein
0.9275

268596

CBF
0.9254

260959

SrmB
0.925

24217

hypothetical protein
0.9241

262041

MIF4G
0.9234

4372

hypothetical protein
0.9231

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
THUMP_AdoMetMT THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Proteins of this... cl12076 81.4725 6.85E-18 103 - 255 specific 212584
THUMP superfamily THUMP domain, predicted to bind RNA; The THUMP domain is named after THioUridine synthases, RNA... - 81.4725 6.85E-18 103 - 255 superfamily 264537
AdoMet_MTases superfamily S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... - 66.5498 9.25E-13 366 - 615 superfamily 266528
COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] - 149.381 8.89E-40 102 - 610 multi-dom 223194

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34876 PHATR_44096 PHATR_44096 245371 202718 74188 Cre17.g722250.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006306 GO:0008170 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006306

DNA methylation

Details: 
The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
GO Category: 
BP

GO:0008170

N-methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule.
GO Category: 
MF

Add comment

Log in to post comments