21973 G-patch
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21973 chr_3 G-patch 2013360 2014511 - G-patch

Synonyms

NCBI ID Ensembl Genomes exon ID
7452082 Thaps21973.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0226
 0.29

Most Highly Correlated Transcripts

20583

hypothetical protein
0.9356

23210

hypothetical protein
0.9315

23209

hypothetical protein
0.9281

22690

RRM_Nop6
0.9263

24439

hypothetical protein
0.9195

22334

hypothetical protein
0.9193

24907

Sas10
0.9191

24180

PhyH
0.919

34357

Fcf2
0.918

22099

hypothetical protein
0.916

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
G-patch G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in... cl02611 56.7445 7.88E-11 99 - 141 specific 250723
G-patch superfamily G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in... - 56.7445 7.88E-11 99 - 141 superfamily 261371

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34050 PHATRDRAFT_34050 181233 257671 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005622 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

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