22112 Vps54 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22112 chr_4 Vps54 superfamily 324809 329553 - Vps54 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442072 Thaps22112.1, Thaps22112.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0448

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0113
 0.35

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9029

23971

zf-UBR
0.9002

263610

COG3899
0.8952

23497

hypothetical protein
0.8886

24335

hypothetical protein
0.8864

9491

hypothetical protein
0.8858

8576

Ion_trans_2
0.8856

24078

hypothetical protein
0.8787

6068

KH-I
0.8773

24331

(Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily
0.8745

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Vps54 superfamily Vps54-like protein; This family contains various proteins that are homologs of the yeast Vps54... - 129.718 3.60E-34 1108 - 1239 superfamily 116538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50446 PHATRDRAFT_50446 145960 2179 452881 Not available AT4G19490.2 295925

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments