22297 VPS9 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22297 chr_4 VPS9 superfamily 1280828 1283309 - VPS9 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448790 Thaps22297.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0142

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0103
 0.42

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.934

9364

hypothetical protein
0.914

bd410

(bd410) HNHc
0.9085

268460

PolY superfamily
0.9036

11300

hypothetical protein
0.9034

29322

AAT_I superfamily
0.8961

21778

hypothetical protein
0.8901

bd1808

(bd1808) NA
0.8814

bd1842

(bd1842) NA
0.8811

4333

hypothetical protein
0.8801

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
VPS9 superfamily Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It... - 66.8412 3.66E-13 698 - 799 superfamily 267922

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44656 PHATRDRAFT_44656 234394 321636 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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