22690 RRM_Nop6Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22690	chr_5	RRM_Nop6	944385	946021	-	RRM_Nop6

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446464	Thaps22690.1, Thaps22690.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0286	0.31	0.00000006 32

Most Highly Correlated Transcripts

41038 (P5CS) PLN02418 0.932	21973 G-patch 0.9263	25365 hypothetical protein 0.9138	2443 hypothetical protein 0.9123	264498 PRK00142 0.906	268661 (pab1) RRM_SF superfamily 0.9043
23210 hypothetical protein 0.9027	9040 ELP3 0.9027	39062 SpoU 0.8985	20686 RanBD_NUP50 0.896

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_Nop6		RNA recognition motif in Saccharomyces cerevisiae nucleolar protein 6 (Nop6) and similar proteins;...	cl17169	126.695	1.78E-35	194 - 274	specific	240846
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	126.695	1.78E-35	194 - 274	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_32836	PHATRDRAFT_32836	150968	205367	95191	Not available	Not available	475091

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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