39062 SpoU
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39062 chr_1 SpoU 1050776 1051472 + SpoU

Synonyms

NCBI ID Ensembl Genomes exon ID
7445659 Thaps39062.1, Thaps39062.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0327

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0100
 0.39

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9198

13308

PLN02948
0.9189

267979

HCO3_cotransp superfamily
0.9144

20825

hypothetical protein
0.9117

4517

hypothetical protein
0.9066

31145

COG4581
0.9048

41038

(P5CS) PLN02418
0.9025

22690

RRM_Nop6
0.8985

37609

PKc_like superfamily
0.8962

25365

hypothetical protein
0.8904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 122.233 2.63E-35 22 - 167 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 122.233 2.63E-35 22 - 167 superfamily 266618
SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] - 143.196 5.54E-42 5 - 172 multi-dom 223640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2150 PHATRDRAFT_49741 PHATRDRAFT_49741 140283 301841 62124 Not available AT4G38020.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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