22792 Rab1_Ypt1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22792 chr_5 Rab1_Ypt1 1443569 1445280 + Rab1_Ypt1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448137 Thaps22792.2, Thaps22792.3, Thaps22792.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0213

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0137
 0.33

Most Highly Correlated Transcripts

26991

GRX_GRXh_1_2_like
0.928

20405

GRX_GRXh_1_2_like
0.9184

2107

hypothetical protein
0.914

262525

(PSB5) proteasome_beta_type_5
0.9121

plastid_psb28

0.9103

37934

GRX_PICOT_like
0.9101

5038

DUF179
0.91

4270

Scramblase superfamily
0.9078

2463

hypothetical protein
0.9072

1871

hypothetical protein
0.9049

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab1_Ypt1 Rab GTPase family 1 includes the yeast homolog Ypt1; Rab1/Ypt1 subfamily. Rab1 is found in every... cl17170 350.861 3.71E-124 7 - 172 specific 206661
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 350.861 3.71E-124 7 - 172 superfamily 266525
PLN03110 Rab GTPase; Provisional - 214.792 5.88E-70 4 - 201 multi-dom 178657

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22713 PHATRDRAFT_22713 168632 234485 439272 Cre12.g560150.t1.2 AT4G17530.1 309136

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0000160 GO:0003677 GO:0006355 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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