262525 (PSB5) proteasome_beta_type_5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262525 chr_5 (PSB5) proteasome_beta_type_5 1197203 1198343 + proteasome_beta_type_5

Synonyms

NCBI ID Ensembl Genomes exon ID
7450071 Thaps262525.2, Thaps262525.3, Thaps262525.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9438

26868

(PSA3) proteasome_alpha_type_3
0.9364

26991

GRX_GRXh_1_2_like
0.9339

39157

(RPT2) PTZ00361
0.9258

269624

TIM_phosphate_binding superfamily
0.9225

32037

(RPT6) RPT1
0.9168

22792

Rab1_Ypt1
0.9121

30971

MIR
0.9075

37920

cyclophilin_ABH_like
0.9059

262994

COG0637
0.9035

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 363.488 1.15E-127 67 - 253 specific 239730
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 363.488 1.15E-127 67 - 253 superfamily 260443
PTZ00488 Proteasome subunit beta type-5; Provisional - 361.999 3.57E-126 39 - 270 multi-dom 185666

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20007 PHATRDRAFT_20007 270345 183219 443537 Cre10.g461950.t1.2 AT1G13060.1 285863

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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