23115 UBCc superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23115	chr_6	UBCc superfamily	961986	965012	+	UBCc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445948	Thaps23115.1, Thaps23115.3, Thaps23115.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0435

Most Highly Correlated Transcripts

bd1841 (bd1841) CAP10 superfamily 0.9029	bd1786 (bd1786) GLTP superfamily 0.8899	4091 hypothetical protein 0.8888	bd1808 (bd1808) NA 0.884	bd415 (bd415) arom_aa_hydroxylase superfamily 0.8782	bd410 (bd410) HNHc 0.8762
5927 UBQ superfamily 0.8705	12836 EEP superfamily 0.8705	24583 Nitro_FMN_reductase superfamily 0.8665	bd1793 (bd1793) NA 0.8659

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	88.4133	1.22E-20	324 - 445	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48512	PHATRDRAFT_48512	235766	292645	466615	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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