23279 Tho2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23279	chr_6	Tho2	1740549	1746134	+	Tho2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444592	Thaps23279.5, Thaps23279.4, Thaps23279.3, Thaps23279.2, Thaps23279.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0414

Most Highly Correlated Transcripts

4047 hypothetical protein 0.9391	24852 hypothetical protein 0.9282	21122 Nipped-B_C 0.9241	23582 hypothetical protein 0.9234	3934 COG2319 0.9207	24688 hypothetical protein 0.9172
25356 DUF1325 superfamily 0.9149	22071 Ion_trans 0.9093	25600 hypothetical protein 0.9076	22333 hypothetical protein 0.9061

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Tho2 superfamily		Transcription factor/nuclear export subunit protein 2; THO and TREX form a eukaryotic complex which...	-	204.105	8.09E-58	1199 - 1535	superfamily	256382
Tho2 superfamily		Transcription factor/nuclear export subunit protein 2; THO and TREX form a eukaryotic complex which...	-	204.105	8.09E-58	1199 - 1535	superfamily	256382
Thoc2 superfamily		Transcription- and export-related complex subunit; The THO/TREX complex is the transcription- and...	-	77.2999	1.83E-16	895 - 973	superfamily	256579

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44632	PHATRDRAFT_44632	251136	291937	Not available	Cre12.g507700.t1.1	AT1G24706.2	348397

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

Not available -

Add comment

Log in to post comments