23402 SPC25
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23402 chr_7 SPC25 551173 552055 + SPC25

Synonyms

NCBI ID Ensembl Genomes exon ID
7446237 Thaps23402.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0051

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0027
 0.38

Most Highly Correlated Transcripts

262977

NA
0.9144

38964

Chorismate_synthase
0.9051

4524

DHQS
0.9023

38707

Aldolase_Class_I superfamily
0.8976

13393

PLN02321
0.894

36525

PRK09427
0.8925

36007

Aldolase_II superfamily
0.8898

36641

Aldolase_Class_I superfamily
0.889

35136

NA
0.8886

22547

hypothetical protein
0.8814

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SPC25 superfamily Microsomal signal peptidase 25 kDa subunit (SPC25); This family consists of several microsomal... - 93.4563 1.54E-23 38 - 218 superfamily 253872
SPC25 superfamily Microsomal signal peptidase 25 kDa subunit (SPC25); This family consists of several microsomal... - 93.4563 1.54E-23 38 - 218 superfamily 253872

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15399 PHATRDRAFT_15399 183888 302104 Not available Not available AT2G39960.1 Not available

KEGG

KEGG description KEGG Pathway
Protein export map03060

GO Terms

GO:0005787 GO:0005792 GO:0006465 GO:0009003 GO:0016021 GO:0008233 GO:0008234 -

GO:0005787

signal peptidase complex

Details: 
A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space.
GO Category: 
CC

GO:0005792

NA

Details: 
NA
GO Category: 
NA

GO:0006465

signal peptide processing

Details: 
The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
GO Category: 
BP

GO:0009003

NA

Details: 
NA
GO Category: 
NA

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

GO:0008234

cysteine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

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