23469 Plus-3Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23469	chr_7	Plus-3	949480	953107	-	Plus-3

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444121	Thaps23469.4, Thaps23469.1, Thaps23469.3, Thaps23469.2, Thaps23469.6, Thaps23469.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0246

Most Highly Correlated Transcripts

28004 hypothetical protein 0.9275	25270 hypothetical protein 0.9255	23769 hypothetical protein 0.9254	24604 hypothetical protein 0.9248	267979 HCO3_cotransp superfamily 0.9233	5760 SART-1 0.9204
261324 PLN02724 0.9168	8144 hypothetical protein 0.9127	23560 hypothetical protein 0.9093	4757 Leo1 0.909

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Plus-3		Plus-3 domain; This domain is about 90 residues in length and is often found associated with the...	cl02186	85.7763	1.70E-19	547 - 656	specific	251744
Plus-3 superfamily		Plus-3 domain; This domain is about 90 residues in length and is often found associated with the...	-	85.7763	1.70E-19	547 - 656	superfamily	261212
COG5296		Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [...	-	73.5369	9.59E-14	518 - 843	multi-dom	227615

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_38931	PHATRDRAFT_38931	233058	Not available	222940	Not available	AT1G61040.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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