2409 MPN_NPL4Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2409	chr_2	MPN_NPL4	924164	925799	-	MPN_NPL4

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450252	Thaps2409.1, Thaps2409.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0214

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0137	0.33	130 41

Most Highly Correlated Transcripts

20664 hypothetical protein 0.9246	7937 CHD 0.9192	10055 hypothetical protein 0.9181	10810 HP superfamily 0.9179	7216 hypothetical protein 0.917	3071 NA 0.9133
39157 (RPT2) PTZ00361 0.9126	2702 Pro_isomerase 0.9059	5038 DUF179 0.9034	2107 hypothetical protein 0.9025

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MPN_NPL4		Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain; Npl4p (nuclear protein...	cl13996	248.813	2.82E-78	170 - 469	specific	163692
MPN superfamily		Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains...	-	248.813	2.82E-78	170 - 469	superfamily	265414

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44044	PHATRDRAFT_44044	247186	66896	Not available	Not available	AT2G47970.1	345180

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

Not available -

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