24262 (RS2) rpsE_arch
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24262 chr_10 (RS2) rpsE_arch 1058114 1059090 + rpsE_arch

Synonyms

NCBI ID Ensembl Genomes exon ID
7449350 Thaps24262.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047

Most Highly Correlated Transcripts

23025

(RPL1) Ribosomal_L1
0.9402

39282

(RL15) PTZ00026
0.9178

41319

(RL18) Ribosomal_L18e superfamily
0.8908

39255

PLN02734
0.8861

31084

PTZ00129
0.8854

bd1133

(bd1133) ATM1
0.8695

263785

(Tp_TAZ4_PHD2_ZZ2) KAT11 superfamily
0.8673

24525

hypothetical protein
0.8664

40010

Mito_carr
0.8652

36007

Aldolase_II superfamily
0.8597

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_S5 superfamily Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, N-terminal domain. - 96.9709 1.07E-25 84 - 150 superfamily 144065
Ribosomal_S5 superfamily Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, N-terminal domain. - 96.9709 1.07E-25 84 - 150 superfamily 144065
Ribosomal_S5_C superfamily Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, C-terminal domain. - 91.3275 1.42E-23 167 - 240 superfamily 252121
Ribosomal_S5_C superfamily Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, C-terminal domain. - 91.3275 1.42E-23 167 - 240 superfamily 252121
rpsE_arch ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type); This model finds eukaryotic... - 309.4 3.77E-106 43 - 245 multi-dom 233235

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48411 PHATRDRAFT_48411 211493 307698 240177 Cre01.g039250.t2.1 AT3G57490.1 494630

KEGG

KEGG description KEGG Pathway
Ribosome map03010

GO Terms

GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0015935 -

GO:0003735

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0005840

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0015935

small ribosomal subunit

Details: 
The smaller of the two subunits of a ribosome.
GO Category: 
CC

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