25355 (SEC61-1) PTZ00219
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25355 chr_18 (SEC61-1) PTZ00219 325414 327552 - PTZ00219

Synonyms

NCBI ID Ensembl Genomes exon ID
7444259 Thaps25355.1, Thaps25355.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0290

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0114
 0.48

Most Highly Correlated Transcripts

9247

hypothetical protein
0.8902

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8839

bd1645

(bd1645) tpt
0.8785

bd258

(bd258) HU
0.8714

bd1765

(bd1765) NA
0.8643

bd846

(bd846) NA
0.8574

bd1380

(bd1380) ycf39
0.8526

38964

Chorismate_synthase
0.8519

bd1820

(bd1820) Fasciclin
0.8516

bd1078

(bd1078) NA
0.8511

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SecY superfamily SecY translocase; SecY translocase. - 243.205 9.68E-76 73 - 456 superfamily 249786
SecY superfamily SecY translocase; SecY translocase. - 243.205 9.68E-76 73 - 456 superfamily 249786
Plug_translocon superfamily Plug domain of Sec61p; The Sec61/SecY translocon mediates translocation of proteins across the... - 65.5238 1.20E-13 38 - 72 superfamily 256059
Plug_translocon superfamily Plug domain of Sec61p; The Sec61/SecY translocon mediates translocation of proteins across the... - 65.5238 1.20E-13 38 - 72 superfamily 256059
PTZ00219 Sec61 alpha subunit; Provisional - 849.294 0 1 - 464 multi-dom 185519

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41031 PHATRDRAFT_41031 205448 Not available Not available Not available AT1G78720.1 284123

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0009306 GO:0015450 GO:0016020 -

GO:0009306

protein secretion

Details: 
The controlled release of proteins from a cell.
GO Category: 
BP

GO:0015450

P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Details: 
Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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