25487 RNase_PH superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25487 chr_19a_19 RNase_PH superfamily 443471 444756 + RNase_PH superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449935 Thaps25487.2, Thaps25487.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0327

Most Highly Correlated Transcripts

19158

GRX_PICOT_like
0.9105

24030

hypothetical protein
0.8816

261823

FIG superfamily
0.8746

16114

PLN02350
0.8686

5806

TIM_phosphate_binding superfamily
0.86

264670

Thioredoxin_like superfamily
0.8561

bd1806

(bd1806) AAT_I superfamily
0.8536

1014

hypothetical protein
0.8503

8498

Ribosomal_L9_N
0.847

bd643

(bd643) NA
0.8467

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 141.934 5.09E-40 83 - 353 superfamily 261591
ECX1 archaeal exosome-like complex exonuclease 1; This family contains the archaeal protein orthologous... - 100.208 8.15E-25 74 - 345 multi-dom 131120

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12322 PHATRDRAFT_12322 152761 288230 Not available Not available Not available 512336

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0004534 GO:0016896 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

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