5806 TIM_phosphate_binding superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5806 chr_5 TIM_phosphate_binding superfamily 2179024 2180236 - TIM_phosphate_binding superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444924 Thaps5806.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0259
 0.35

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9298

23812

TrmA
0.9215

4372

hypothetical protein
0.919

267979

HCO3_cotransp superfamily
0.9159

5053

hypothetical protein
0.9156

25365

hypothetical protein
0.9134

22627

hypothetical protein
0.9128

270120

Uup
0.9122

2392

hypothetical protein
0.9108

261893

Ofd1_CTDD
0.9074

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 149.921 1.56E-42 145 - 359 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31981 PHATRDRAFT_31981 231450 180400 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004425 GO:0006568 -

GO:0004425

indole-3-glycerol-phosphate synthase activity

Details: 
Catalysis of the reaction: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O.
GO Category: 
MF

GO:0006568

tryptophan metabolic process

Details: 
The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
GO Category: 
BP

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