25866 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25866 chr_23 WD40 superfamily 342367 344371 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442673 Thaps25866.1, Thaps25866.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0118

Most Highly Correlated Transcripts

11664

DUF3510
0.8574

8885

DUF3510
0.857

25252

hypothetical protein
0.843

269547

DnaJ
0.8318

13448

Sec1
0.8308

264762

0.8251

23115

UBCc superfamily
0.8246

5927

UBQ superfamily
0.8244

7143

hypothetical protein
0.8243

4091

hypothetical protein
0.8237

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 123.599 1.44E-31 270 - 532 superfamily 238121
Prp19 superfamily Prp19/Pso4-like; This regions is found specifically in PRP19-like protein. The region represented... - 83.439 1.83E-19 96 - 149 superfamily 254916
COG2319 FOG: WD40 repeat [General function prediction only] - 91.3035 8.87E-20 240 - 519 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1638 PHATRDRAFT_bd1638 238709 322623 219888 Cre02.g073650.t1.2 AT2G33340.3 546135

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

Not available -

Add comment

Log in to post comments