260833 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260833 chr_1 Uup 862581 865385 - Uup

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0042

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

ThpsCp134

(rpl34) ribosomal protein L34
0.9096

267979

HCO3_cotransp superfamily
0.9043

6610

hypothetical protein
0.9036

40200

TRX_reduct
0.9027

268443

SAICAR_synt_Sc
0.9001

40001

PRK05433
0.8949

273

PRK04004
0.8907

24363

SbcC
0.8893

23345

hypothetical protein
0.885

511

(GBP1) PRK09601
0.8833

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 143.358 9.91E-40 75 - 307 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 143.358 9.91E-40 75 - 307 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 143.358 9.91E-40 75 - 307 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 143.358 9.91E-40 75 - 307 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 61.054 2.19E-11 301 - 383 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 61.054 2.19E-11 301 - 383 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 473.276 4.84E-159 92 - 608 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41351 PHATRDRAFT_41351 226627 320503 61142 Cre06.g265100.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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