261748 COG0523
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261748 chr_3 COG0523 768579 771094 + COG0523

Synonyms

NCBI ID Ensembl Genomes exon ID
7444743 Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0023

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0225
 0.26

Most Highly Correlated Transcripts

270222

0.9223

3353

FMN_dh
0.9148

21081

hypothetical protein
0.8988

bd1192

(bd1192) Acyl_ACP_Desat
0.8896

38306

Chloroa_b-bind
0.8868

1254

Chalcone superfamily
0.8855

bd651

(bd651) HMGB-UBF_HMG-box
0.8806

32955

QOR2
0.8779

28326

lytB_ispH
0.8761

4370

hypothetical protein
0.875

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cobW CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression... cl17203 136.986 1.23E-37 187 - 392 specific 251330
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 136.986 1.23E-37 187 - 392 superfamily 266552
CobW_C Cobalamin synthesis protein cobW C-terminal domain; CobW proteins are generally found proximal to... cl08458 89.1934 2.16E-21 441 - 563 specific 214844
CobW_C superfamily Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... - 89.1934 2.16E-21 441 - 563 superfamily 263667
COG0523 Putative GTPases (G3E family) [General function prediction only] - 230.26 5.86E-70 186 - 565 multi-dom 223597

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49415 PHATRDRAFT_49415 Not available Not available 430429 Cre14.g613200.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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