262283 AFD_class_I superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262283 chr_4 AFD_class_I superfamily 1858249 1860072 - AFD_class_I superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0083

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0039
 0.52

Most Highly Correlated Transcripts

bd211

(bd211) Maf_Ham1 superfamily
0.9138

4108

hypothetical protein
0.907

bd1214

(bd1214) KISc_C_terminal
0.8877

36007

Aldolase_II superfamily
0.8863

24525

hypothetical protein
0.8841

6028

NA
0.8818

bd950

(bd950) NA
0.8804

bd951

(bd951) NA
0.8791

7929

hypothetical protein
0.8747

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8737

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 528.729 0 1 - 459 superfamily 266508
PRK08276 long-chain-fatty-acid--CoA ligase; Validated - 238.65 3.02E-72 1 - 465 multi-dom 236215

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9896 PHATRDRAFT_9896 278601 241182 416064 Cre03.g211745.t1.1 AT3G21240.1 334746

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0016207 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016207

4-coumarate-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + 4-coumarate + CoA = AMP + diphosphate + 4-coumaroyl-CoA.
GO Category: 
MF

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