262455 COG1272
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262455 chr_5 COG1272 627161 627973 - COG1272

Synonyms

NCBI ID Ensembl Genomes exon ID
7446402 Thaps262455.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0178
 0.28

Most Highly Correlated Transcripts

29506

cpn10
0.901

4270

Scramblase superfamily
0.9004

270222

0.8946

261608

PLN02585
0.8898

36037

Trypsin_2
0.8865

262743

Choline_transpo
0.8804

889

hypothetical protein
0.8793

1788

hypothetical protein
0.8775

40586

(GMD1) PLN02653
0.8743

35025

Lung_7-TM_R superfamily
0.8673

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only] cl03831 166.258 5.22E-50 34 - 267 specific 224191
HlyIII superfamily Haemolysin-III related; Members of this family are integral membrane proteins. This family includes... - 166.258 5.22E-50 34 - 267 superfamily 261909

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46556 PHATRDRAFT_46556 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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