262467 MFS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262467 chr_5 MFS 695213 697209 + MFS

Synonyms

NCBI ID Ensembl Genomes exon ID
7451798 Thaps262467.1, Thaps262467.3, Thaps262467.4, Thaps262467.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0147

Most Highly Correlated Transcripts

21434

AAA_26
0.9268

261400

NA
0.9234

17582

HAD-SF-IIA-hyp3
0.9157

13448

Sec1
0.9132

3310

hypothetical protein
0.9126

9174

DUF563
0.9107

1244

hypothetical protein
0.9089

22153

DnaJ
0.9051

2494

UAA
0.9047

25537

Glyco_transf_34 superfamily
0.9034

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 115.104 1.17E-28 54 - 447 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 115.104 1.17E-28 54 - 447 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 102.883 2.36E-24 52 - 410 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43646 PHATRDRAFT_43646 Not available Not available Not available Not available Not available 560629

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016020 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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