262598 PLN00152
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262598 chr_5 PLN00152 1664899 1665387 + PLN00152

Synonyms

NCBI ID Ensembl Genomes exon ID
7448182 Thaps262598.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0240

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0233
 0.34

Most Highly Correlated Transcripts

37118

FeThRed_B
0.9088

19158

GRX_PICOT_like
0.9078

268443

SAICAR_synt_Sc
0.9029

35136

NA
0.9014

16114

PLN02350
0.8879

22315

hypothetical protein
0.8841

39946

(AMS2) PTZ00104
0.8836

5053

hypothetical protein
0.8827

40200

TRX_reduct
0.8821

36007

Aldolase_II superfamily
0.8801

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00152 DNA-directed RNA polymerase; Provisional cl14651 154.256 4.84E-48 21 - 162 specific 177755
RNA_pol_Rpb6 superfamily RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III.... - 154.256 4.84E-48 21 - 162 superfamily 246684

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10148 PHATRDRAFT_10148 194432 152963 47669 Cre01.g002200.t1.1 AT2G04630.1 286529

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006351 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006351

transcription, DNA-templated

Details: 
The cellular synthesis of RNA on a template of DNA.
GO Category: 
BP

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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