263658 GUN4Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263658	chr_10	GUN4	466639	467694	-	GUN4

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445875	Thaps263658.3, Thaps263658.2, Thaps263658.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0024

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0260	0.25	6.6 43

Most Highly Correlated Transcripts

261608 PLN02585 0.9545	268480 (GGPS1) Trans_IPPS_HT 0.933	9021 (PbgD) hemC 0.9292	3974 (UroD2) URO-D 0.927	31012 (Cpx1) PLN02873 0.9216	270346 hypothetical protein 0.9202
261499 MttA_Hcf106 superfamily 0.9183	36235 p450 superfamily 0.9168	11757 hypothetical protein 0.9157	270378 hypothetical protein 0.9152

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GUN4 superfamily		GUN4-like; In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression...	-	136.566	3.26E-40	88 - 229	superfamily	253186
GUN4 superfamily		GUN4-like; In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression...	-	136.566	3.26E-40	88 - 229	superfamily	253186

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_15980	PHATRDRAFT_15980	188937	321232	418961	Cre05.g246800.t1.2	AT3G59400.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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