263845 RRM_SF superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263845	chr_11b	RRM_SF superfamily	36880	37363	+	RRM_SF superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445447	Thaps263845.3, Thaps263845.1, Thaps263845.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0101	0.32	0.0013 0.0095

Most Highly Correlated Transcripts

bd1875 (bd1875) NA 0.8875	bd1877 (bd1877) NA 0.8628	33088 Obg_CgtA 0.8598	bd630 (bd630) NA 0.8465	36614 PLN02536 0.8314	35224 Aldo_ket_red 0.8258
268766 MdlB 0.8242	35164 acolac_lg 0.8228	bd196 (bd196) Snf7 superfamily 0.822	23599 Cyto_heme_lyase superfamily 0.8161

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	83.4425	1.37E-21	43 - 119	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_33658	PHATRDRAFT_33658	223116	147896	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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