26806 PTZ00416
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26806 chr_1 PTZ00416 2495114 2498851 - PTZ00416

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0254

Most Highly Correlated Transcripts

269064

Nup84_Nup100 superfamily
0.9226

12836

EEP superfamily
0.9186

36372

S_TKc
0.9078

262371

AAA_12 superfamily
0.906

22318

hypothetical protein
0.9024

35239

CPSF_A
0.901

40925

(RPB21) PRK08565
0.8985

261179

Myotub-related
0.8951

26212

(COP2) COG5096
0.8898

9912

hypothetical protein
0.8897

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (... cl02789 300.745 6.60E-96 587 - 763 specific 238840
EFG_like_IV superfamily Elongation Factor G-like domain IV. This family includes the translational elongation factor termed... - 300.745 6.60E-96 587 - 763 superfamily 243187
eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion... cl02787 146.185 7.34E-41 393 - 485 specific 239757
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 146.185 7.34E-41 393 - 485 superfamily 261449
eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small... cl02785 143.156 5.25E-40 760 - 839 specific 239765
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 143.156 5.25E-40 760 - 839 superfamily 261447
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 271.064 2.91E-84 43 - 238 superfamily 266525
PTZ00416 elongation factor 2; Provisional - 702.96 0 43 - 885 multi-dom 240409

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45319 PHATRDRAFT_45319 258637 323067 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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