40925 (RPB21) PRK08565
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40925 chr_6 (RPB21) PRK08565 439102 443461 - PRK08565

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0254

Most Highly Correlated Transcripts

bd446

(bd446) HrpA
0.9685

26140

PRP8
0.9166

21027

hypothetical protein
0.9127

12836

EEP superfamily
0.9096

268049

(ATH1) HA2
0.9071

34505

hypothetical protein
0.907

1216

hypothetical protein
0.9069

11261

WD40 superfamily
0.9045

23979

zf-HC5HC2H superfamily
0.8997

35239

CPSF_A
0.8994

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 1128.05 0 82 - 1241 superfamily 238353
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 1128.05 0 82 - 1241 superfamily 238353
RNA_pol_Rpb2_4 superfamily RNA polymerase Rpb2, domain 4; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 109.305 4.97E-28 631 - 693 superfamily 113341
RNA_pol_Rpb2_4 superfamily RNA polymerase Rpb2, domain 4; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 109.305 4.97E-28 631 - 693 superfamily 113341
RNA_pol_Rpb2_5 superfamily RNA polymerase Rpb2, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 77.6224 3.73E-17 718 - 766 superfamily 191029
RNA_pol_Rpb2_5 superfamily RNA polymerase Rpb2, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 77.6224 3.73E-17 718 - 766 superfamily 191029
PRK08565 DNA-directed RNA polymerase subunit B; Provisional - 1227.13 0 70 - 1240 multi-dom 236291

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11441 PHATRDRAFT_11441 273391 Not available 465037 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments