268078 MFS_1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268078 chr_1 MFS_1 1995706 1997223 + MFS_1

Synonyms

NCBI ID Ensembl Genomes exon ID
7443160 Thaps268078.2, Thaps268078.1, Thaps268078.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0222
 0.32

Most Highly Correlated Transcripts

262201

PP2Cc
0.9151

23033

NADB_Rossmann superfamily
0.9128

7085

PI-PLCc_GDPD_SF superfamily
0.9064

263515

RimL
0.9056

21425

hypothetical protein
0.905

6452

hypothetical protein
0.9042

2463

hypothetical protein
0.9039

22842

hypothetical protein
0.9028

4192

hypothetical protein
0.9003

7025

(Tp_Myb2R6) L-asparaginase_like superfamily
0.8986

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 71.5761 5.60E-14 1 - 400 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 71.5761 5.60E-14 1 - 400 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 75.1488 3.15E-15 1 - 366 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44480 PHATRDRAFT_44480 204285 264283 Not available Not available Not available 326883

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

Add comment

Log in to post comments