263515 RimLThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263515	chr_9	RimL	387553	389034	-	RimL

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443519	Thaps263515.2, Thaps263515.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0175

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0238	0.33	11 380000

Most Highly Correlated Transcripts

36592 HMGB-UBF_HMG-box 0.9343	18462 EMP24_GP25L 0.9127	16295 FBPase 0.9118	39299 (ARF3) Arf1_5_like 0.9094	22842 hypothetical protein 0.9081	31014 AP-4_Mu4_Cterm 0.9069
268078 MFS_1 0.9056	25068 hypothetical protein 0.9056	7967 2A0106 0.9053	7611 hypothetical protein 0.9034

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RimL		Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure...	-	61.1174	3.77E-11	322 - 435	multi-dom	224584

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44829	PHATRDRAFT_44829	153422	237452	Not available	Not available	Not available	251969

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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