268461 COG2423
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268461 chr_3 COG2423 824536 825999 + COG2423

Synonyms

NCBI ID Ensembl Genomes exon ID
7444753 Thaps268461.2, Thaps268461.1, Thaps268461.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0124

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0047
 0.45

Most Highly Correlated Transcripts

28651

(AAT1_1) PLN02644
0.8577

6087

hypothetical protein
0.8553

bd885

(bd885) NA
0.8443

bd1890

(bd1890) NA
0.8437

5626

hypothetical protein
0.8433

31979

ENDO3c
0.8321

42646

PRK04342
0.8315

6883

Peptidase_C19 superfamily
0.8279

10474

hypothetical protein
0.8272

2660

hypothetical protein
0.8267

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Shikimate_DH superfamily Shikimate / quinate 5-dehydrogenase; This family contains both shikimate and quinate dehydrogenases... - 151.212 5.56E-42 75 - 405 superfamily 267477
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] - 206.389 1.71E-62 74 - 416 multi-dom 225280

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34775 PHATRDRAFT_34775 Not available Not available Not available Not available AT5G52810.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008473 -

GO:0008473

ornithine cyclodeaminase activity

Details: 
Catalysis of the reaction: L-ornithine = L-proline + NH(4)(+).
GO Category: 
MF

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