42646 PRK04342
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42646 chr_17 PRK04342 287313 288881 - PRK04342

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0142

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0161
 0.36

Most Highly Correlated Transcripts

263404

Peptidase_C1 superfamily
0.9472

bd410

(bd410) HNHc
0.9453

10474

hypothetical protein
0.9416

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9365

6911

(Tp_CCCH10) regulator [Rayko]
0.933

34042

Abhydrolase_6
0.9311

1244

hypothetical protein
0.9301

1186

hypothetical protein
0.9286

5256

hypothetical protein
0.9286

2451

PH-like superfamily
0.9282

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the... cl00718 220.589 7.62E-71 175 - 336 specific 173774
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 220.589 7.62E-71 175 - 336 superfamily 260587
TP6A_N superfamily Type IIB DNA topoisomerase; Type II DNA topoisomerases are ubiquitous enzymes that catalyse the ATP... - 82.5683 4.91E-20 61 - 128 superfamily 190973
TP6A_N superfamily Type IIB DNA topoisomerase; Type II DNA topoisomerases are ubiquitous enzymes that catalyse the ATP... - 82.5683 4.91E-20 61 - 128 superfamily 190973
PRK04342 DNA topoisomerase VI subunit A; Provisional - 326.085 3.98E-109 5 - 352 multi-dom 235287

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2371 PHATRDRAFT_24838 PHATRDRAFT_24838 239125 251788 66465 Cre02.g084800.t1.2 AT5G02820.1 506531

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003918 GO:0005524 GO:0006259 GO:0006265 GO:0007131 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003918

DNA topoisomerase type II (ATP-hydrolyzing) activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

GO:0006265

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP

GO:0007131

reciprocal meiotic recombination

Details: 
The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity.
GO Category: 
BP

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