268661 (pab1) RRM_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268661 chr_4 (pab1) RRM_SF superfamily 851525 852797 + RRM_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453333 Thaps268661.3, Thaps268661.1, Thaps268661.2, Thaps268661.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0318

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0229
 0.40

Most Highly Correlated Transcripts

2443

hypothetical protein
0.9321

22690

RRM_Nop6
0.9043

36007

Aldolase_II superfamily
0.9032

19158

GRX_PICOT_like
0.9019

267979

HCO3_cotransp superfamily
0.8972

8498

Ribosomal_L9_N
0.8902

bd381

(bd381) NA
0.8879

22599

hypothetical protein
0.8877

261324

PLN02724
0.8875

270120

Uup
0.8847

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 107.377 6.70E-31 73 - 121 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 64.583 1.84E-13 27 - 120 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13095 PHATRDRAFT_13095 163693 262278 362850 Cre06.g274500.t1.2 AT5G51120.1 409429

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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