268735 (GPB1) WD40Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268735	chr_4	(GPB1) WD40	1595682	1599607	-	WD40

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443711	Thaps268735.8, Thaps268735.3, Thaps268735.1, Thaps268735.9, Thaps268735.4, Thaps268735.2, Thaps268735.7, Thaps268735.5, Thaps268735.10, Thaps268735.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0193	0.22	0.14 75

Most Highly Correlated Transcripts

32395 RNA_pol 0.9584	25129 hypothetical protein 0.9532	20985 COG5593 0.9498	21173 hypothetical protein 0.9463	40884 (RPA1) RNAP_I_RPA1_N 0.946	36434 DUF1253 0.9455
11949 Nop14 0.9438	268130 hypothetical protein 0.9428	23900 hypothetical protein 0.9426	32374 TPR 0.9418

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	73.5232	2.72E-14	173 - 373	superfamily	238121
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	73.5232	2.72E-14	173 - 373	superfamily	238121
Utp13 superfamily		Utp13 specific WD40 associated domain; Utp13 is a component of the five protein Pwp2 complex that...	-	140.395	3.72E-38	848 - 987	superfamily	254932
Utp13 superfamily		Utp13 specific WD40 associated domain; Utp13 is a component of the five protein Pwp2 complex that...	-	140.395	3.72E-38	848 - 987	superfamily	254932
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	73.5232	2.72E-14	173 - 373	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	69.3471	2.18E-12	140 - 437	multi-dom	225201
COG2319		FOG: WD40 repeat [General function prediction only]	-	69.3471	2.18E-12	140 - 437	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11703	PHATRDRAFT_11703	211484	236801	Not available	Cre07.g344050.t1.1	AT5G16750.1	309482

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

Not available -

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