32374 TPRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32374	chr_2	TPR	563347	566783	-	TPR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446479	Thaps32374.1, Thaps32374.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0257	0.20	5.4 79

Most Highly Correlated Transcripts

20985 COG5593 0.969	21082 Cupin_8 superfamily 0.966	33425 BMS1 0.9524	23862 Syo1_like superfamily 0.9495	268252 Utp21 superfamily 0.9489	25129 hypothetical protein 0.9481
268331 WD40 0.9445	268130 hypothetical protein 0.9443	268735 (GPB1) WD40 0.9418	36434 DUF1253 0.9377

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	70.1015	4.04E-14	817 - 911	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	70.1015	4.04E-14	817 - 911	superfamily	238112

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_13835	PHATRDRAFT_13835	149628	202479	234946	Cre09.g401700.t1.2	AT5G17270.1	351623

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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