2690 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2690	chr_2	WD40 superfamily	1605322	1607117	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443084	Thaps2690.1, Thaps2690.3, Thaps2690.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0217

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0130	0.40	0.00008 4.1

Most Highly Correlated Transcripts

36669 TPT 0.9246	261400 NA 0.9175	2441 Thymidylate_kin 0.9139	37934 GRX_PICOT_like 0.9027	22673 NA 0.8994	26991 GRX_GRXh_1_2_like 0.8987
25068 hypothetical protein 0.8927	30701 PRK05279 0.8911	2988 hypothetical protein 0.8898	8338 hypothetical protein 0.8877

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	80.0716	5.81E-17	279 - 538	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	70.8879	2.38E-13	164 - 538	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45364	PHATRDRAFT_45364	166212	66979	Not available	Cre01.g019500.t1.2	Not available	326486

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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